Biological sources and sinks of dimethylsulfide disentangled by an induced bloom experiment and a numerical model

18 pages, 5 figures, 2 tables, supporting information https://doi.org/10.1002/lno.12470.-- Data availability statement: The code and data of DMOS-Bloom are freely available on GitHub (https://github.com/Guillaume%20LeGland/DMOS-Bloom) and Zenodo (https://doi.org/10.5281/zenodo.7944840) under the MIT license. The DMOS-Bloom code was designed to run on open-source GNU-Octave (tested on version 4.4.1) and on MATLAB (tested on version R2010b). The execution has been tested on Windows with a 2.5-GHz Intel i5-3210M processor, on Linux Ubuntu with a 2.4-GHz Intel Xeon E5645 processor, and on Linux Debian with a 2.6-GHz Intel Xeon E5-2640 processor. The main code modules are: DMOS_Bloom is the main script to launch DMOS-Bloom, calling all functions. DMOS_Bloom_keys is the function where the different options are declared. DMOS_Bloom_parameters is the function where the values of the model parameters are assigned. DMOS_Bloom_ode45eqs is a function called at each time step to solve the ordinary differential equations of the DMOS-BLOOM model. DMOS-Bloom also contains other functions to load data, plot figures, and optimize model parameters. The DATA folder contains two input files: BERGEN-DATA.csv and BERGEN-DMS-CONSUMERS.csv. BERGEN-DATA.csv contains observations of phytoplankton and heterotrophic bacteria abundances and of nitrate, particulate DMSP, dissolved DMSP and DMS concentrations. BERGEN-DMS-CONSUMERS.csv contains the relative abundances of the DMS-consuming taxa measured during the experiment. Once all files are loaded, DMOS-Bloom is launched simply by calling the DMOS-Bloom script

Bibliographic Details

Main Authors:	Le Gland, Guillaume, Masdeu Navarro, Marta, Galí, Martí, Vallina, Sergio M., Gralka, Matti, Vincent, Flora, Cordero, Otto X., Vardi, Assaf, Simó, Rafel
Other Authors:	European Commission
Format:	artículo biblioteca
Language:	English
Published:	Association for the Sciences of Limnology and Oceanography 2024-01
Subjects:	Conserve and sustainably use the oceans, seas and marine resources for sustainable development,
Online Access:	http://hdl.handle.net/10261/349736
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