Structure and function of the global ocean microbiome

Structure and function of the global ocean microbiome

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Sunagawa, Shinichi ... et. al.-- Aquatic Sciences Meeting, Aquatic Sciences: Global And Regional Perspectives - North Meets South, 22-27 February 2015, Granada, Spain

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Main Authors: Sunagawa, Shinichi, Salazar, Guillem, Cornejo-Castillo, Francisco M., Ferrera, Isabel, Gasol, Josep M., Royo-Llonch, Marta, Sarmento, Hugo, Acinas, Silvia G.
Format: comunicación de congreso biblioteca
Published: Association for the Sciences of Limnology and Oceanography 2015-02-26
Online Access:http://hdl.handle.net/10261/136426
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spelling dig-icm-es-10261-1364262019-10-16T11:41:01Z Structure and function of the global ocean microbiome Sunagawa, Shinichi Salazar, Guillem Cornejo-Castillo, Francisco M. Ferrera, Isabel Gasol, Josep M. Royo-Llonch, Marta Sarmento, Hugo Acinas, Silvia G. Sunagawa, Shinichi ... et. al.-- Aquatic Sciences Meeting, Aquatic Sciences: Global And Regional Perspectives - North Meets South, 22-27 February 2015, Granada, Spain We present the initial analysis of 243 metagenomes collected by the TARA Oceans expedition. Samples were collected at three depths (surface, deep chlorophyll maximum, and mesopelagic) at 68 geographically dispersed stations, covering all major ocean basins, except the Artic. After DNA extraction and sequencing, we have assembled the resulting 7.2 Terabasepairs, computationally predicted genes, and in combination with publicly available data, formed a non-redundant catalog consisting of 40 million genes, the majority of which are novel. Our analysis of function and structure community focused on 139 prokaryotic enriched samples, from which we determined that the overall community is mainly determined by depth stratification. Within the photic zone, we report that temperature is the main environmental correlate with community structure. We also observe that the majority of the prokaryotic gene abundance stems from a small core set of orthologous groups, which is present in all samples and largely shared with microbial communities in other environments. The functional profile of these core genes is stable across geographic and environmental gradients, while non-core genes show evidence of adaptation to the local environment Peer Reviewed 2016-09-07T07:30:30Z 2016-09-07T07:30:30Z 2015-02-26 2016-09-07T07:30:30Z comunicación de congreso http://purl.org/coar/resource_type/c_5794 2015 Aquatic Sciences Meeting. Program Book: 110 (2015) http://hdl.handle.net/10261/136426 http://www.sgmeet.com/aslo/granada2015/program.asp Sí none Association for the Sciences of Limnology and Oceanography
institution ICM ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-icm-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del ICM España
description Sunagawa, Shinichi ... et. al.-- Aquatic Sciences Meeting, Aquatic Sciences: Global And Regional Perspectives - North Meets South, 22-27 February 2015, Granada, Spain
format comunicación de congreso
author Sunagawa, Shinichi
Salazar, Guillem
Cornejo-Castillo, Francisco M.
Ferrera, Isabel
Gasol, Josep M.
Royo-Llonch, Marta
Sarmento, Hugo
Acinas, Silvia G.
spellingShingle Sunagawa, Shinichi
Salazar, Guillem
Cornejo-Castillo, Francisco M.
Ferrera, Isabel
Gasol, Josep M.
Royo-Llonch, Marta
Sarmento, Hugo
Acinas, Silvia G.
Structure and function of the global ocean microbiome
author_facet Sunagawa, Shinichi
Salazar, Guillem
Cornejo-Castillo, Francisco M.
Ferrera, Isabel
Gasol, Josep M.
Royo-Llonch, Marta
Sarmento, Hugo
Acinas, Silvia G.
author_sort Sunagawa, Shinichi
title Structure and function of the global ocean microbiome
title_short Structure and function of the global ocean microbiome
title_full Structure and function of the global ocean microbiome
title_fullStr Structure and function of the global ocean microbiome
title_full_unstemmed Structure and function of the global ocean microbiome
title_sort structure and function of the global ocean microbiome
publisher Association for the Sciences of Limnology and Oceanography
publishDate 2015-02-26
url http://hdl.handle.net/10261/136426
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AT ferreraisabel structureandfunctionoftheglobaloceanmicrobiome
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AT royollonchmarta structureandfunctionoftheglobaloceanmicrobiome
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