Natural Selection in the Great Apes

Natural selection is crucial for the adaptation of populations to their environments. Here, we present the first global study of natural selection in the Hominidae (humans and great apes) based on genome-wide information from population samples representing all extant species (including most subspecies). Combining several neutrality tests we create a multi-species map of signatures of natural selection covering all major types of natural selection. We find that the estimated efficiency of both purifying and positive selection varies between species and is significantly correlated with their long-term effective population size. Thus, even the modest differences in population size among the closely related Hominidae lineages have resulted in differences in their ability to remove deleterious alleles and to adapt to changing environments. Most signatures of balancing and positive selection are species-specific, with signatures of balancing selection more often being shared among species. We also identify loci with evidence of positive selection across several lineages. Notably, we detect signatures of positive selection in several genes related to brain function, anatomy, diet and immune processes. Our results contribute to a better understanding of human evolution by putting the evidence of natural selection in humans within its larger evolutionary context. The global map of natural selection in our closest living relatives is available as an interactive browser at http://tinyurl.com/nf8qmzh.

Saved in:
Bibliographic Details
Main Authors: Cagan, Alexander, Theunert, Christoph, Laayouni, Hafid, Santpere, Gabriel, Pybus, Marc, Casals, Ferran, Prüfer, Kay, Navarro, Arcadi, Marqués-Bonet, Tomàs, Bertranpetit, Jaume, Andrés, Aida M.
Other Authors: Max Planck Society
Format: artículo biblioteca
Language:English
Published: Oxford University Press 2016-12
Subjects:Evolution, Adaptation, Comparative genomics, Primates,
Online Access:http://hdl.handle.net/10261/151993
http://dx.doi.org/10.13039/501100004189
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100002809
http://dx.doi.org/10.13039/501100000781
http://dx.doi.org/10.13039/501100003043
http://dx.doi.org/10.13039/501100004837
Tags: Add Tag
No Tags, Be the first to tag this record!
id dig-ibe-es-10261-151993
record_format koha
spelling dig-ibe-es-10261-1519932021-12-27T16:54:06Z Natural Selection in the Great Apes Cagan, Alexander Theunert, Christoph Laayouni, Hafid Santpere, Gabriel Pybus, Marc Casals, Ferran Prüfer, Kay Navarro, Arcadi Marqués-Bonet, Tomàs Bertranpetit, Jaume Andrés, Aida M. Max Planck Society Ministerio de Economía y Competitividad (España) Generalitat de Catalunya European Research Council EMBO Ministerio de Ciencia e Innovación (España) Evolution Adaptation Comparative genomics Primates Natural selection is crucial for the adaptation of populations to their environments. Here, we present the first global study of natural selection in the Hominidae (humans and great apes) based on genome-wide information from population samples representing all extant species (including most subspecies). Combining several neutrality tests we create a multi-species map of signatures of natural selection covering all major types of natural selection. We find that the estimated efficiency of both purifying and positive selection varies between species and is significantly correlated with their long-term effective population size. Thus, even the modest differences in population size among the closely related Hominidae lineages have resulted in differences in their ability to remove deleterious alleles and to adapt to changing environments. Most signatures of balancing and positive selection are species-specific, with signatures of balancing selection more often being shared among species. We also identify loci with evidence of positive selection across several lineages. Notably, we detect signatures of positive selection in several genes related to brain function, anatomy, diet and immune processes. Our results contribute to a better understanding of human evolution by putting the evidence of natural selection in humans within its larger evolutionary context. The global map of natural selection in our closest living relatives is available as an interactive browser at http://tinyurl.com/nf8qmzh. This work was supported by funding from the Max Planck Society to K.P. and A.M.A.; by grants from the Ministerio de Economía y Competitividad in Spain (grant BFU2013-43726-P) and the Secretaria d’Universitats i Recerca de la Generalitat de Catalunya (grant GRC 2014 SGR 866) to J.B.; by an European Research Council Advanced Grant (233297) to S.Pääbo and European Research Council Starting Grant (260372) to T.M.B.; and by European Molecular Biology Organization Young Investigator Award and Ministerio de Ciencia e Innovación in Spain (BFU2014-55090-P) to T.M.B. Peer reviewed 2017-06-26T07:03:41Z 2017-06-26T07:03:41Z 2016-12 artículo http://purl.org/coar/resource_type/c_6501 Molecular Biology and Evolution 33(12): 3268-3283 (2016) 0737-4038 http://hdl.handle.net/10261/151993 10.1093/molbev/msw215 1537-1719 http://dx.doi.org/10.13039/501100004189 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100002809 http://dx.doi.org/10.13039/501100000781 http://dx.doi.org/10.13039/501100003043 http://dx.doi.org/10.13039/501100004837 27795229 en #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/BFU2013-43726-P info:eu-repo/grantAgreement/EC/FP7/233297 info:eu-repo/grantAgreement/EC/FP7/260372 Publisher's version https://doi.org/10.1093/molbev/msw215 Sí open Oxford University Press
institution IBE ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-ibe-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IBE España
language English
topic Evolution
Adaptation
Comparative genomics
Primates
Evolution
Adaptation
Comparative genomics
Primates
spellingShingle Evolution
Adaptation
Comparative genomics
Primates
Evolution
Adaptation
Comparative genomics
Primates
Cagan, Alexander
Theunert, Christoph
Laayouni, Hafid
Santpere, Gabriel
Pybus, Marc
Casals, Ferran
Prüfer, Kay
Navarro, Arcadi
Marqués-Bonet, Tomàs
Bertranpetit, Jaume
Andrés, Aida M.
Natural Selection in the Great Apes
description Natural selection is crucial for the adaptation of populations to their environments. Here, we present the first global study of natural selection in the Hominidae (humans and great apes) based on genome-wide information from population samples representing all extant species (including most subspecies). Combining several neutrality tests we create a multi-species map of signatures of natural selection covering all major types of natural selection. We find that the estimated efficiency of both purifying and positive selection varies between species and is significantly correlated with their long-term effective population size. Thus, even the modest differences in population size among the closely related Hominidae lineages have resulted in differences in their ability to remove deleterious alleles and to adapt to changing environments. Most signatures of balancing and positive selection are species-specific, with signatures of balancing selection more often being shared among species. We also identify loci with evidence of positive selection across several lineages. Notably, we detect signatures of positive selection in several genes related to brain function, anatomy, diet and immune processes. Our results contribute to a better understanding of human evolution by putting the evidence of natural selection in humans within its larger evolutionary context. The global map of natural selection in our closest living relatives is available as an interactive browser at http://tinyurl.com/nf8qmzh.
author2 Max Planck Society
author_facet Max Planck Society
Cagan, Alexander
Theunert, Christoph
Laayouni, Hafid
Santpere, Gabriel
Pybus, Marc
Casals, Ferran
Prüfer, Kay
Navarro, Arcadi
Marqués-Bonet, Tomàs
Bertranpetit, Jaume
Andrés, Aida M.
format artículo
topic_facet Evolution
Adaptation
Comparative genomics
Primates
author Cagan, Alexander
Theunert, Christoph
Laayouni, Hafid
Santpere, Gabriel
Pybus, Marc
Casals, Ferran
Prüfer, Kay
Navarro, Arcadi
Marqués-Bonet, Tomàs
Bertranpetit, Jaume
Andrés, Aida M.
author_sort Cagan, Alexander
title Natural Selection in the Great Apes
title_short Natural Selection in the Great Apes
title_full Natural Selection in the Great Apes
title_fullStr Natural Selection in the Great Apes
title_full_unstemmed Natural Selection in the Great Apes
title_sort natural selection in the great apes
publisher Oxford University Press
publishDate 2016-12
url http://hdl.handle.net/10261/151993
http://dx.doi.org/10.13039/501100004189
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100002809
http://dx.doi.org/10.13039/501100000781
http://dx.doi.org/10.13039/501100003043
http://dx.doi.org/10.13039/501100004837
work_keys_str_mv AT caganalexander naturalselectioninthegreatapes
AT theunertchristoph naturalselectioninthegreatapes
AT laayounihafid naturalselectioninthegreatapes
AT santperegabriel naturalselectioninthegreatapes
AT pybusmarc naturalselectioninthegreatapes
AT casalsferran naturalselectioninthegreatapes
AT pruferkay naturalselectioninthegreatapes
AT navarroarcadi naturalselectioninthegreatapes
AT marquesbonettomas naturalselectioninthegreatapes
AT bertranpetitjaume naturalselectioninthegreatapes
AT andresaidam naturalselectioninthegreatapes
_version_ 1777668672249135104