Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism

l-rhamnose (6-deoxy-mannose) occurs in nature mainly as a component of certain plant structural polysaccharides and bioactive metabolites but has also been found in some microorganisms and animals. The release of l-rhamnose from these substrates is catalysed by extracellular enzymes including α-l-rhamnosidases, the production of which is induced in its presence. The free sugar enters cells via specific uptake systems where it can be metabolized. Of two l-rhamnose catabolic pathways currently known in microorganisms a non-phosphorylated pathway has been identified in fungi and some bacteria but little is known of the regulatory mechanisms governing it in fungi. In this study two genes (lraA and lraB) are predicted to be involved in the catabolism of l-rhamnose, along with lraC, in the filamentous fungus Aspergillus nidulans. Transcription of all three is co-regulated with that of the genes encoding α-l-rhamnosidases, i.e. induction mediated by the l-rhamnose-responsive transcription factor RhaR and repression of induction in the presence of glucose via a CreA-independent mechanism. The participation of lraA/AN4186 (encoding l-rhamnose dehydrogenase) in l-rhamnose catabolism was revealed by the phenotypes of knock-out mutants and their complemented strains. lraA deletion negatively affects both growth on l-rhamnose and the synthesis of α-l-rhamnosidases, indicating not only the indispensability of this pathway for l-rhamnose utilization but also that a metabolite derived from this sugar is the true physiological inducer.

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Bibliographic Details
Main Authors: MacCabe, Andrew P., Ninou, E.I., Pardo, Ester, Orejas, Margarita
Other Authors: Ministerio de Economía y Competitividad (España)
Format: artículo biblioteca
Language:English
Published: BioMed Central 2020-10-02
Subjects:Aspergillus nidulans, L-rhamnose catabolism, Transcriptional regulation, RhaR, CCR, CreA-independent, LRA, lraA/AN4186, l-rhamnose dehydrogenase, RT-qPCR, α-l-rhamnosidases,
Online Access:http://hdl.handle.net/10261/221459
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100000780
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spelling dig-iata-es-10261-2214592021-12-28T16:52:10Z Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism MacCabe, Andrew P. Ninou, E.I. Pardo, Ester Orejas, Margarita Ministerio de Economía y Competitividad (España) European Commission Aspergillus nidulans L-rhamnose catabolism Transcriptional regulation RhaR CCR CreA-independent LRA lraA/AN4186 l-rhamnose dehydrogenase RT-qPCR α-l-rhamnosidases l-rhamnose (6-deoxy-mannose) occurs in nature mainly as a component of certain plant structural polysaccharides and bioactive metabolites but has also been found in some microorganisms and animals. The release of l-rhamnose from these substrates is catalysed by extracellular enzymes including α-l-rhamnosidases, the production of which is induced in its presence. The free sugar enters cells via specific uptake systems where it can be metabolized. Of two l-rhamnose catabolic pathways currently known in microorganisms a non-phosphorylated pathway has been identified in fungi and some bacteria but little is known of the regulatory mechanisms governing it in fungi. In this study two genes (lraA and lraB) are predicted to be involved in the catabolism of l-rhamnose, along with lraC, in the filamentous fungus Aspergillus nidulans. Transcription of all three is co-regulated with that of the genes encoding α-l-rhamnosidases, i.e. induction mediated by the l-rhamnose-responsive transcription factor RhaR and repression of induction in the presence of glucose via a CreA-independent mechanism. The participation of lraA/AN4186 (encoding l-rhamnose dehydrogenase) in l-rhamnose catabolism was revealed by the phenotypes of knock-out mutants and their complemented strains. lraA deletion negatively affects both growth on l-rhamnose and the synthesis of α-l-rhamnosidases, indicating not only the indispensability of this pathway for l-rhamnose utilization but also that a metabolite derived from this sugar is the true physiological inducer. This work was supported by the Spanish Ministerio de Ciencia e Innovación/FEDER and Ministerio de Economía y Competitividad/FEDER (Grant Numbers AGL2011-29925 and AGL2015-6631-C2-2-R, respectively). Peer reviewed 2020-10-21T05:38:44Z 2020-10-21T05:38:44Z 2020-10-02 artículo http://purl.org/coar/resource_type/c_6501 Microbial Cell Factories 19(1): 188 (2020) http://hdl.handle.net/10261/221459 10.1186/s12934-020-01443-9 1475-2859 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100000780 33008411 en #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/AGL2015-6631-C2-2-R Publisher's version https://doi.org/10.1186/s12934-020-01443-9 Sí open BioMed Central
institution IATA ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-iata-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IATA España
language English
topic Aspergillus nidulans
L-rhamnose catabolism
Transcriptional regulation
RhaR
CCR
CreA-independent
LRA
lraA/AN4186
l-rhamnose dehydrogenase
RT-qPCR
α-l-rhamnosidases
Aspergillus nidulans
L-rhamnose catabolism
Transcriptional regulation
RhaR
CCR
CreA-independent
LRA
lraA/AN4186
l-rhamnose dehydrogenase
RT-qPCR
α-l-rhamnosidases
spellingShingle Aspergillus nidulans
L-rhamnose catabolism
Transcriptional regulation
RhaR
CCR
CreA-independent
LRA
lraA/AN4186
l-rhamnose dehydrogenase
RT-qPCR
α-l-rhamnosidases
Aspergillus nidulans
L-rhamnose catabolism
Transcriptional regulation
RhaR
CCR
CreA-independent
LRA
lraA/AN4186
l-rhamnose dehydrogenase
RT-qPCR
α-l-rhamnosidases
MacCabe, Andrew P.
Ninou, E.I.
Pardo, Ester
Orejas, Margarita
Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism
description l-rhamnose (6-deoxy-mannose) occurs in nature mainly as a component of certain plant structural polysaccharides and bioactive metabolites but has also been found in some microorganisms and animals. The release of l-rhamnose from these substrates is catalysed by extracellular enzymes including α-l-rhamnosidases, the production of which is induced in its presence. The free sugar enters cells via specific uptake systems where it can be metabolized. Of two l-rhamnose catabolic pathways currently known in microorganisms a non-phosphorylated pathway has been identified in fungi and some bacteria but little is known of the regulatory mechanisms governing it in fungi. In this study two genes (lraA and lraB) are predicted to be involved in the catabolism of l-rhamnose, along with lraC, in the filamentous fungus Aspergillus nidulans. Transcription of all three is co-regulated with that of the genes encoding α-l-rhamnosidases, i.e. induction mediated by the l-rhamnose-responsive transcription factor RhaR and repression of induction in the presence of glucose via a CreA-independent mechanism. The participation of lraA/AN4186 (encoding l-rhamnose dehydrogenase) in l-rhamnose catabolism was revealed by the phenotypes of knock-out mutants and their complemented strains. lraA deletion negatively affects both growth on l-rhamnose and the synthesis of α-l-rhamnosidases, indicating not only the indispensability of this pathway for l-rhamnose utilization but also that a metabolite derived from this sugar is the true physiological inducer.
author2 Ministerio de Economía y Competitividad (España)
author_facet Ministerio de Economía y Competitividad (España)
MacCabe, Andrew P.
Ninou, E.I.
Pardo, Ester
Orejas, Margarita
format artículo
topic_facet Aspergillus nidulans
L-rhamnose catabolism
Transcriptional regulation
RhaR
CCR
CreA-independent
LRA
lraA/AN4186
l-rhamnose dehydrogenase
RT-qPCR
α-l-rhamnosidases
author MacCabe, Andrew P.
Ninou, E.I.
Pardo, Ester
Orejas, Margarita
author_sort MacCabe, Andrew P.
title Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism
title_short Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism
title_full Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism
title_fullStr Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism
title_full_unstemmed Catabolism of l-rhamnose in A. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a CreA-independent mechanism
title_sort catabolism of l-rhamnose in a. nidulans proceeds via the non-phosphorylated pathway and is glucose repressed by a crea-independent mechanism
publisher BioMed Central
publishDate 2020-10-02
url http://hdl.handle.net/10261/221459
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100000780
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