Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana)

Pterocarpus officinalis Jacq. is a legume tree native to the Caribbean islands and South America growing as a dominant species in swamp forests. To analyze (i) the genetic diversity and (ii) the symbiotic properties of its associated nitrogen-fixing soil bacteria, root nodules were collected from P. officinalis distributed in 16 forest sites of the Caribbean islands and French Guiana. The sequencing of the 16S-23S ribosomal RNA intergenic spacer region (ITS) showed that all bacteria belonged to the Bradyrhizobium genus. Bacteria isolated from insular zones showed very close sequence homologies with Bradyrhizobium genospecies V belonging to the Bradyrhizobium japonicum super-clade. By contrast, bacteria isolated from continental region displayed a larger genetic diversity and belonged to B. elkanii super-clade. Two strains from Puerto Rico and one from French Guiana were not related to any known sequence and could be defined as a new genospecies. Inoculation experiments did not show any host specificity of the Bradyrhizobium strains tested in terms of infectivity. However, homologous Bradyrhizobium sp. strain-P. officinalis provenance associations were more efficient in terms of nodule production, N acquisition, and growth than heterologous ones. The dominant status of P. officinalis in the islands may explain the lower bacterial diversity compared to that found in the continent where P. officinalis is associated with other leguminous tree species. The specificity in efficiency found between Bradyrhizobium strains and host tree provenances could be due to a coevolution process between both partners and needs to be taken in consideration in the framework of rehabilitation plantation programs.

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Bibliographic Details
Main Authors: Le Roux, Christine, Muller, Félix, Bouvet, Jean-Marc, Dreyfus, Bernard, Béna, Gilles, Galiana, Antoine, Bâ, Amadou Moustapha
Format: article biblioteca
Language:eng
Subjects:K01 - Foresterie - Considérations générales, P34 - Biologie du sol, F62 - Physiologie végétale - Croissance et développement, Pterocarpus, Bradyrhizobium, interactions biologiques, variation génétique, évolution, symbiose, aptitude à coloniser, mycorhizé à vésicule et arbuscule, reconstitution forestière, sol marécageux, forêt tropicale humide, http://aims.fao.org/aos/agrovoc/c_6333, http://aims.fao.org/aos/agrovoc/c_27138, http://aims.fao.org/aos/agrovoc/c_49896, http://aims.fao.org/aos/agrovoc/c_15975, http://aims.fao.org/aos/agrovoc/c_2745, http://aims.fao.org/aos/agrovoc/c_7563, http://aims.fao.org/aos/agrovoc/c_36703, http://aims.fao.org/aos/agrovoc/c_24415, http://aims.fao.org/aos/agrovoc/c_13802, http://aims.fao.org/aos/agrovoc/c_7543, http://aims.fao.org/aos/agrovoc/c_7976, http://aims.fao.org/aos/agrovoc/c_6362, http://aims.fao.org/aos/agrovoc/c_3093, http://aims.fao.org/aos/agrovoc/c_1320, http://aims.fao.org/aos/agrovoc/c_36645, http://aims.fao.org/aos/agrovoc/c_3406, http://aims.fao.org/aos/agrovoc/c_4635, http://aims.fao.org/aos/agrovoc/c_2363, http://aims.fao.org/aos/agrovoc/c_32372, http://aims.fao.org/aos/agrovoc/c_3081,
Online Access:http://agritrop.cirad.fr/573808/
http://agritrop.cirad.fr/573808/1/document_573808.pdf
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id dig-cirad-fr-573808
record_format koha
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic K01 - Foresterie - Considérations générales
P34 - Biologie du sol
F62 - Physiologie végétale - Croissance et développement
Pterocarpus
Bradyrhizobium
interactions biologiques
variation génétique
évolution
symbiose
aptitude à coloniser
mycorhizé à vésicule et arbuscule
reconstitution forestière
sol marécageux
forêt tropicale humide
http://aims.fao.org/aos/agrovoc/c_6333
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_49896
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_2745
http://aims.fao.org/aos/agrovoc/c_7563
http://aims.fao.org/aos/agrovoc/c_36703
http://aims.fao.org/aos/agrovoc/c_24415
http://aims.fao.org/aos/agrovoc/c_13802
http://aims.fao.org/aos/agrovoc/c_7543
http://aims.fao.org/aos/agrovoc/c_7976
http://aims.fao.org/aos/agrovoc/c_6362
http://aims.fao.org/aos/agrovoc/c_3093
http://aims.fao.org/aos/agrovoc/c_1320
http://aims.fao.org/aos/agrovoc/c_36645
http://aims.fao.org/aos/agrovoc/c_3406
http://aims.fao.org/aos/agrovoc/c_4635
http://aims.fao.org/aos/agrovoc/c_2363
http://aims.fao.org/aos/agrovoc/c_32372
http://aims.fao.org/aos/agrovoc/c_3081
K01 - Foresterie - Considérations générales
P34 - Biologie du sol
F62 - Physiologie végétale - Croissance et développement
Pterocarpus
Bradyrhizobium
interactions biologiques
variation génétique
évolution
symbiose
aptitude à coloniser
mycorhizé à vésicule et arbuscule
reconstitution forestière
sol marécageux
forêt tropicale humide
http://aims.fao.org/aos/agrovoc/c_6333
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_49896
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_2745
http://aims.fao.org/aos/agrovoc/c_7563
http://aims.fao.org/aos/agrovoc/c_36703
http://aims.fao.org/aos/agrovoc/c_24415
http://aims.fao.org/aos/agrovoc/c_13802
http://aims.fao.org/aos/agrovoc/c_7543
http://aims.fao.org/aos/agrovoc/c_7976
http://aims.fao.org/aos/agrovoc/c_6362
http://aims.fao.org/aos/agrovoc/c_3093
http://aims.fao.org/aos/agrovoc/c_1320
http://aims.fao.org/aos/agrovoc/c_36645
http://aims.fao.org/aos/agrovoc/c_3406
http://aims.fao.org/aos/agrovoc/c_4635
http://aims.fao.org/aos/agrovoc/c_2363
http://aims.fao.org/aos/agrovoc/c_32372
http://aims.fao.org/aos/agrovoc/c_3081
spellingShingle K01 - Foresterie - Considérations générales
P34 - Biologie du sol
F62 - Physiologie végétale - Croissance et développement
Pterocarpus
Bradyrhizobium
interactions biologiques
variation génétique
évolution
symbiose
aptitude à coloniser
mycorhizé à vésicule et arbuscule
reconstitution forestière
sol marécageux
forêt tropicale humide
http://aims.fao.org/aos/agrovoc/c_6333
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_49896
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_2745
http://aims.fao.org/aos/agrovoc/c_7563
http://aims.fao.org/aos/agrovoc/c_36703
http://aims.fao.org/aos/agrovoc/c_24415
http://aims.fao.org/aos/agrovoc/c_13802
http://aims.fao.org/aos/agrovoc/c_7543
http://aims.fao.org/aos/agrovoc/c_7976
http://aims.fao.org/aos/agrovoc/c_6362
http://aims.fao.org/aos/agrovoc/c_3093
http://aims.fao.org/aos/agrovoc/c_1320
http://aims.fao.org/aos/agrovoc/c_36645
http://aims.fao.org/aos/agrovoc/c_3406
http://aims.fao.org/aos/agrovoc/c_4635
http://aims.fao.org/aos/agrovoc/c_2363
http://aims.fao.org/aos/agrovoc/c_32372
http://aims.fao.org/aos/agrovoc/c_3081
K01 - Foresterie - Considérations générales
P34 - Biologie du sol
F62 - Physiologie végétale - Croissance et développement
Pterocarpus
Bradyrhizobium
interactions biologiques
variation génétique
évolution
symbiose
aptitude à coloniser
mycorhizé à vésicule et arbuscule
reconstitution forestière
sol marécageux
forêt tropicale humide
http://aims.fao.org/aos/agrovoc/c_6333
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_49896
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_2745
http://aims.fao.org/aos/agrovoc/c_7563
http://aims.fao.org/aos/agrovoc/c_36703
http://aims.fao.org/aos/agrovoc/c_24415
http://aims.fao.org/aos/agrovoc/c_13802
http://aims.fao.org/aos/agrovoc/c_7543
http://aims.fao.org/aos/agrovoc/c_7976
http://aims.fao.org/aos/agrovoc/c_6362
http://aims.fao.org/aos/agrovoc/c_3093
http://aims.fao.org/aos/agrovoc/c_1320
http://aims.fao.org/aos/agrovoc/c_36645
http://aims.fao.org/aos/agrovoc/c_3406
http://aims.fao.org/aos/agrovoc/c_4635
http://aims.fao.org/aos/agrovoc/c_2363
http://aims.fao.org/aos/agrovoc/c_32372
http://aims.fao.org/aos/agrovoc/c_3081
Le Roux, Christine
Muller, Félix
Bouvet, Jean-Marc
Dreyfus, Bernard
Béna, Gilles
Galiana, Antoine
Bâ, Amadou Moustapha
Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana)
description Pterocarpus officinalis Jacq. is a legume tree native to the Caribbean islands and South America growing as a dominant species in swamp forests. To analyze (i) the genetic diversity and (ii) the symbiotic properties of its associated nitrogen-fixing soil bacteria, root nodules were collected from P. officinalis distributed in 16 forest sites of the Caribbean islands and French Guiana. The sequencing of the 16S-23S ribosomal RNA intergenic spacer region (ITS) showed that all bacteria belonged to the Bradyrhizobium genus. Bacteria isolated from insular zones showed very close sequence homologies with Bradyrhizobium genospecies V belonging to the Bradyrhizobium japonicum super-clade. By contrast, bacteria isolated from continental region displayed a larger genetic diversity and belonged to B. elkanii super-clade. Two strains from Puerto Rico and one from French Guiana were not related to any known sequence and could be defined as a new genospecies. Inoculation experiments did not show any host specificity of the Bradyrhizobium strains tested in terms of infectivity. However, homologous Bradyrhizobium sp. strain-P. officinalis provenance associations were more efficient in terms of nodule production, N acquisition, and growth than heterologous ones. The dominant status of P. officinalis in the islands may explain the lower bacterial diversity compared to that found in the continent where P. officinalis is associated with other leguminous tree species. The specificity in efficiency found between Bradyrhizobium strains and host tree provenances could be due to a coevolution process between both partners and needs to be taken in consideration in the framework of rehabilitation plantation programs.
format article
topic_facet K01 - Foresterie - Considérations générales
P34 - Biologie du sol
F62 - Physiologie végétale - Croissance et développement
Pterocarpus
Bradyrhizobium
interactions biologiques
variation génétique
évolution
symbiose
aptitude à coloniser
mycorhizé à vésicule et arbuscule
reconstitution forestière
sol marécageux
forêt tropicale humide
http://aims.fao.org/aos/agrovoc/c_6333
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_49896
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_2745
http://aims.fao.org/aos/agrovoc/c_7563
http://aims.fao.org/aos/agrovoc/c_36703
http://aims.fao.org/aos/agrovoc/c_24415
http://aims.fao.org/aos/agrovoc/c_13802
http://aims.fao.org/aos/agrovoc/c_7543
http://aims.fao.org/aos/agrovoc/c_7976
http://aims.fao.org/aos/agrovoc/c_6362
http://aims.fao.org/aos/agrovoc/c_3093
http://aims.fao.org/aos/agrovoc/c_1320
http://aims.fao.org/aos/agrovoc/c_36645
http://aims.fao.org/aos/agrovoc/c_3406
http://aims.fao.org/aos/agrovoc/c_4635
http://aims.fao.org/aos/agrovoc/c_2363
http://aims.fao.org/aos/agrovoc/c_32372
http://aims.fao.org/aos/agrovoc/c_3081
author Le Roux, Christine
Muller, Félix
Bouvet, Jean-Marc
Dreyfus, Bernard
Béna, Gilles
Galiana, Antoine
Bâ, Amadou Moustapha
author_facet Le Roux, Christine
Muller, Félix
Bouvet, Jean-Marc
Dreyfus, Bernard
Béna, Gilles
Galiana, Antoine
Bâ, Amadou Moustapha
author_sort Le Roux, Christine
title Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana)
title_short Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana)
title_full Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana)
title_fullStr Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana)
title_full_unstemmed Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana)
title_sort genetic diversity patterns and functional traits of bradyrhizobium strains associated with pterocarpus officinalis jacq. in caribbean islands and amazonian forest (french guiana)
url http://agritrop.cirad.fr/573808/
http://agritrop.cirad.fr/573808/1/document_573808.pdf
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spelling dig-cirad-fr-5738082024-01-28T22:10:49Z http://agritrop.cirad.fr/573808/ http://agritrop.cirad.fr/573808/ Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana). Le Roux Christine, Muller Félix, Bouvet Jean-Marc, Dreyfus Bernard, Béna Gilles, Galiana Antoine, Bâ Amadou Moustapha. 2014. Microbial Ecology, 68 (2) : 329-338.https://doi.org/10.1007/s00248-014-0392-7 <https://doi.org/10.1007/s00248-014-0392-7> Genetic diversity patterns and functional traits of bradyrhizobium strains associated with Pterocarpus officinalis Jacq. in Caribbean Islands and Amazonian Forest (French Guiana) Le Roux, Christine Muller, Félix Bouvet, Jean-Marc Dreyfus, Bernard Béna, Gilles Galiana, Antoine Bâ, Amadou Moustapha eng 2014 Microbial Ecology K01 - Foresterie - Considérations générales P34 - Biologie du sol F62 - Physiologie végétale - Croissance et développement Pterocarpus Bradyrhizobium interactions biologiques variation génétique évolution symbiose aptitude à coloniser mycorhizé à vésicule et arbuscule reconstitution forestière sol marécageux forêt tropicale humide http://aims.fao.org/aos/agrovoc/c_6333 http://aims.fao.org/aos/agrovoc/c_27138 http://aims.fao.org/aos/agrovoc/c_49896 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_7563 http://aims.fao.org/aos/agrovoc/c_36703 http://aims.fao.org/aos/agrovoc/c_24415 http://aims.fao.org/aos/agrovoc/c_13802 http://aims.fao.org/aos/agrovoc/c_7543 http://aims.fao.org/aos/agrovoc/c_7976 Porto Rico Guyane française Caraïbes Antilles françaises Guadeloupe Martinique Dominique Amazonie France http://aims.fao.org/aos/agrovoc/c_6362 http://aims.fao.org/aos/agrovoc/c_3093 http://aims.fao.org/aos/agrovoc/c_1320 http://aims.fao.org/aos/agrovoc/c_36645 http://aims.fao.org/aos/agrovoc/c_3406 http://aims.fao.org/aos/agrovoc/c_4635 http://aims.fao.org/aos/agrovoc/c_2363 http://aims.fao.org/aos/agrovoc/c_32372 http://aims.fao.org/aos/agrovoc/c_3081 Pterocarpus officinalis Jacq. is a legume tree native to the Caribbean islands and South America growing as a dominant species in swamp forests. To analyze (i) the genetic diversity and (ii) the symbiotic properties of its associated nitrogen-fixing soil bacteria, root nodules were collected from P. officinalis distributed in 16 forest sites of the Caribbean islands and French Guiana. The sequencing of the 16S-23S ribosomal RNA intergenic spacer region (ITS) showed that all bacteria belonged to the Bradyrhizobium genus. Bacteria isolated from insular zones showed very close sequence homologies with Bradyrhizobium genospecies V belonging to the Bradyrhizobium japonicum super-clade. By contrast, bacteria isolated from continental region displayed a larger genetic diversity and belonged to B. elkanii super-clade. Two strains from Puerto Rico and one from French Guiana were not related to any known sequence and could be defined as a new genospecies. Inoculation experiments did not show any host specificity of the Bradyrhizobium strains tested in terms of infectivity. However, homologous Bradyrhizobium sp. strain-P. officinalis provenance associations were more efficient in terms of nodule production, N acquisition, and growth than heterologous ones. The dominant status of P. officinalis in the islands may explain the lower bacterial diversity compared to that found in the continent where P. officinalis is associated with other leguminous tree species. The specificity in efficiency found between Bradyrhizobium strains and host tree provenances could be due to a coevolution process between both partners and needs to be taken in consideration in the framework of rehabilitation plantation programs. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/573808/1/document_573808.pdf application/pdf Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1007/s00248-014-0392-7 10.1007/s00248-014-0392-7 info:eu-repo/semantics/altIdentifier/doi/10.1007/s00248-014-0392-7 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1007/s00248-014-0392-7