Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies
Species in comparative demography studies often have a common phylogenetic or evolutionary ancestry and hence, they cannot fully be treated as independent samples in the statistical analysis. Although the serious implication of ignoring phylogeny has long been recognized, no attempt has been made so far to account for the lack of statistical independence due to phylogeny in multi-species mark-recapture comparative demography studies. In this paper, we propose a Bayesian hierarchical model that explicitly accounts for phylogenetic dependence among species, and to correct for imperfect detection, which is a common phenomenon in free-ranging species. We illustrate the method using individual mark-recapture data collected from 16 seabird species of the order Procellariiformes. Data on body mass and phylogeny of these species are compiled from literature. We investigate the relationship between adult survival and body mass with and without accounting for phylogeny. If we ignore phylogeny, we obtain a positive survival-body mass relationship. However, this relationship is no longer statistically significant once phylogenetic dependence is taken into account, implying that survival may actually depend on an unmeasured variable that is correlated with body mass due to a shared dependence on phylogeny. The proposed model allows the integration of multi-species mark-recapture data and phylogenetic information, and it is therefore a valuable tool in ecological and evolutionary biology.
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Subjects: | U10 - Informatique, mathématiques et statistiques, L20 - Écologie animale, oiseau, évolution, Procellariiformes, population animale, dynamique des populations, capture animale, poids corporel, écologie animale, phylogénie, modèle mathématique, méthode statistique, http://aims.fao.org/aos/agrovoc/c_935, http://aims.fao.org/aos/agrovoc/c_2745, http://aims.fao.org/aos/agrovoc/c_6194, http://aims.fao.org/aos/agrovoc/c_435, http://aims.fao.org/aos/agrovoc/c_6111, http://aims.fao.org/aos/agrovoc/c_24105, http://aims.fao.org/aos/agrovoc/c_15846, http://aims.fao.org/aos/agrovoc/c_427, http://aims.fao.org/aos/agrovoc/c_13325, http://aims.fao.org/aos/agrovoc/c_24199, http://aims.fao.org/aos/agrovoc/c_7377, |
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dig-cirad-fr-5721442024-01-28T21:51:04Z http://agritrop.cirad.fr/572144/ http://agritrop.cirad.fr/572144/ Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies. Abadi Fitsum, Barbraud Christophe, Besson Dominique, Bried Joël, Crochet Pierre-André, Delord Karine, Forcada Jaume, Grosbois Vladimir, Phillips Richard A., Sagar Paul, Thompson Paul M., Waugh Susan, Weimerskirch Henri, Wood Andrew G., Gimenez Olivier. 2014. Ecological Modelling, 273 : 236-241.https://doi.org/10.1016/j.ecolmodel.2013.11.017 <https://doi.org/10.1016/j.ecolmodel.2013.11.017> Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies Abadi, Fitsum Barbraud, Christophe Besson, Dominique Bried, Joël Crochet, Pierre-André Delord, Karine Forcada, Jaume Grosbois, Vladimir Phillips, Richard A. Sagar, Paul Thompson, Paul M. Waugh, Susan Weimerskirch, Henri Wood, Andrew G. Gimenez, Olivier eng 2014 Ecological Modelling U10 - Informatique, mathématiques et statistiques L20 - Écologie animale oiseau évolution Procellariiformes population animale dynamique des populations capture animale poids corporel écologie animale phylogénie modèle mathématique méthode statistique http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_6194 http://aims.fao.org/aos/agrovoc/c_435 http://aims.fao.org/aos/agrovoc/c_6111 http://aims.fao.org/aos/agrovoc/c_24105 http://aims.fao.org/aos/agrovoc/c_15846 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_24199 http://aims.fao.org/aos/agrovoc/c_7377 Species in comparative demography studies often have a common phylogenetic or evolutionary ancestry and hence, they cannot fully be treated as independent samples in the statistical analysis. Although the serious implication of ignoring phylogeny has long been recognized, no attempt has been made so far to account for the lack of statistical independence due to phylogeny in multi-species mark-recapture comparative demography studies. In this paper, we propose a Bayesian hierarchical model that explicitly accounts for phylogenetic dependence among species, and to correct for imperfect detection, which is a common phenomenon in free-ranging species. We illustrate the method using individual mark-recapture data collected from 16 seabird species of the order Procellariiformes. Data on body mass and phylogeny of these species are compiled from literature. We investigate the relationship between adult survival and body mass with and without accounting for phylogeny. If we ignore phylogeny, we obtain a positive survival-body mass relationship. However, this relationship is no longer statistically significant once phylogenetic dependence is taken into account, implying that survival may actually depend on an unmeasured variable that is correlated with body mass due to a shared dependence on phylogeny. The proposed model allows the integration of multi-species mark-recapture data and phylogenetic information, and it is therefore a valuable tool in ecological and evolutionary biology. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/572144/1/document_572144.pdf application/pdf Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1016/j.ecolmodel.2013.11.017 10.1016/j.ecolmodel.2013.11.017 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ecolmodel.2013.11.017 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1016/j.ecolmodel.2013.11.017 |
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U10 - Informatique, mathématiques et statistiques L20 - Écologie animale oiseau évolution Procellariiformes population animale dynamique des populations capture animale poids corporel écologie animale phylogénie modèle mathématique méthode statistique http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_6194 http://aims.fao.org/aos/agrovoc/c_435 http://aims.fao.org/aos/agrovoc/c_6111 http://aims.fao.org/aos/agrovoc/c_24105 http://aims.fao.org/aos/agrovoc/c_15846 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_24199 http://aims.fao.org/aos/agrovoc/c_7377 U10 - Informatique, mathématiques et statistiques L20 - Écologie animale oiseau évolution Procellariiformes population animale dynamique des populations capture animale poids corporel écologie animale phylogénie modèle mathématique méthode statistique http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_6194 http://aims.fao.org/aos/agrovoc/c_435 http://aims.fao.org/aos/agrovoc/c_6111 http://aims.fao.org/aos/agrovoc/c_24105 http://aims.fao.org/aos/agrovoc/c_15846 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_24199 http://aims.fao.org/aos/agrovoc/c_7377 |
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U10 - Informatique, mathématiques et statistiques L20 - Écologie animale oiseau évolution Procellariiformes population animale dynamique des populations capture animale poids corporel écologie animale phylogénie modèle mathématique méthode statistique http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_6194 http://aims.fao.org/aos/agrovoc/c_435 http://aims.fao.org/aos/agrovoc/c_6111 http://aims.fao.org/aos/agrovoc/c_24105 http://aims.fao.org/aos/agrovoc/c_15846 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_24199 http://aims.fao.org/aos/agrovoc/c_7377 U10 - Informatique, mathématiques et statistiques L20 - Écologie animale oiseau évolution Procellariiformes population animale dynamique des populations capture animale poids corporel écologie animale phylogénie modèle mathématique méthode statistique http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_6194 http://aims.fao.org/aos/agrovoc/c_435 http://aims.fao.org/aos/agrovoc/c_6111 http://aims.fao.org/aos/agrovoc/c_24105 http://aims.fao.org/aos/agrovoc/c_15846 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_24199 http://aims.fao.org/aos/agrovoc/c_7377 Abadi, Fitsum Barbraud, Christophe Besson, Dominique Bried, Joël Crochet, Pierre-André Delord, Karine Forcada, Jaume Grosbois, Vladimir Phillips, Richard A. Sagar, Paul Thompson, Paul M. Waugh, Susan Weimerskirch, Henri Wood, Andrew G. Gimenez, Olivier Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies |
description |
Species in comparative demography studies often have a common phylogenetic or evolutionary ancestry and hence, they cannot fully be treated as independent samples in the statistical analysis. Although the serious implication of ignoring phylogeny has long been recognized, no attempt has been made so far to account for the lack of statistical independence due to phylogeny in multi-species mark-recapture comparative demography studies. In this paper, we propose a Bayesian hierarchical model that explicitly accounts for phylogenetic dependence among species, and to correct for imperfect detection, which is a common phenomenon in free-ranging species. We illustrate the method using individual mark-recapture data collected from 16 seabird species of the order Procellariiformes. Data on body mass and phylogeny of these species are compiled from literature. We investigate the relationship between adult survival and body mass with and without accounting for phylogeny. If we ignore phylogeny, we obtain a positive survival-body mass relationship. However, this relationship is no longer statistically significant once phylogenetic dependence is taken into account, implying that survival may actually depend on an unmeasured variable that is correlated with body mass due to a shared dependence on phylogeny. The proposed model allows the integration of multi-species mark-recapture data and phylogenetic information, and it is therefore a valuable tool in ecological and evolutionary biology. |
format |
article |
topic_facet |
U10 - Informatique, mathématiques et statistiques L20 - Écologie animale oiseau évolution Procellariiformes population animale dynamique des populations capture animale poids corporel écologie animale phylogénie modèle mathématique méthode statistique http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_6194 http://aims.fao.org/aos/agrovoc/c_435 http://aims.fao.org/aos/agrovoc/c_6111 http://aims.fao.org/aos/agrovoc/c_24105 http://aims.fao.org/aos/agrovoc/c_15846 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_24199 http://aims.fao.org/aos/agrovoc/c_7377 |
author |
Abadi, Fitsum Barbraud, Christophe Besson, Dominique Bried, Joël Crochet, Pierre-André Delord, Karine Forcada, Jaume Grosbois, Vladimir Phillips, Richard A. Sagar, Paul Thompson, Paul M. Waugh, Susan Weimerskirch, Henri Wood, Andrew G. Gimenez, Olivier |
author_facet |
Abadi, Fitsum Barbraud, Christophe Besson, Dominique Bried, Joël Crochet, Pierre-André Delord, Karine Forcada, Jaume Grosbois, Vladimir Phillips, Richard A. Sagar, Paul Thompson, Paul M. Waugh, Susan Weimerskirch, Henri Wood, Andrew G. Gimenez, Olivier |
author_sort |
Abadi, Fitsum |
title |
Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies |
title_short |
Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies |
title_full |
Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies |
title_fullStr |
Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies |
title_full_unstemmed |
Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies |
title_sort |
importance of accounting for phylogenetic dependence in multi-species mark-recapture studies |
url |
http://agritrop.cirad.fr/572144/ http://agritrop.cirad.fr/572144/1/document_572144.pdf |
work_keys_str_mv |
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