Web accessible tropical crop databases
Web accessible databases were developed at CIRAD in order to analyse and store molecular and phenotypic data of the numerous yet poorly documented tropical crops. TropGENE-DB (http://tropgenedb.cirad.fr) is a crop information system created to store information on genetic resources (agro-morphological data, parentages, allelic diversity), molecular markers, genetics maps, result of QTL (Quantitative Trait Loci) analyses, data from physical mapping, sequences, genes, as well as corresponding references. TropGENE-DB is organized on a crop-basis with currently four running modules (banana, cocoa, cotton and sugarcane), with plans to create additional modules for rice, oil palm, coconut, rubber tree, pineapple, taro, yam and sorghum. To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line database (http://genoplante-info.infobiogen.fr/OryzaTagLine/), a project supported by the French genomic initiative Génoplante. Generic features such as production records, seed stocks, information on GUS or GFP assays in specific organs or tissues, and morphophysiological alterations observed during field evaluation of the insertion lines are displayed. OryGenesDB (http://orygenesdb.cirad.fr) goal is to help rice molecular geneticists to search for insertion lines in their favourite genes and link this information with related molecular data from several resources (cDNA, Gene, EST...) across a friendly user interface. (Texte intégral)
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dig-cirad-fr-5257842024-01-28T13:30:25Z http://agritrop.cirad.fr/525784/ http://agritrop.cirad.fr/525784/ Web accessible tropical crop databases. Ruiz Manuel, Droc Gaëtan, Larmande Pierre, Perin Christophe, Rouard Mathieu, Courtois Brigitte. 2005. In : Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 13, San Diego, États-Unis, 15 Janvier 2005/19 Janvier 2005.http://www.intl-pag.org/13/abstracts/PAG13_P810.html <http://www.intl-pag.org/13/abstracts/PAG13_P810.html> Web accessible tropical crop databases Ruiz, Manuel Droc, Gaëtan Larmande, Pierre Perin, Christophe Rouard, Mathieu Courtois, Brigitte eng 2005 s.n. Abstracts of Plant and Animal Genomes XIIIth Conference, San Diego, CA (USA), January 15-19, 2005 F30 - Génétique et amélioration des plantes U10 - Informatique, mathématiques et statistiques Oryza Musa Gossypium Saccharum Theobroma banque de données génétique banque de gènes génie génétique marqueur génétique séquence nucléotidique adn biologie moléculaire http://aims.fao.org/aos/agrovoc/c_5435 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_6725 http://aims.fao.org/aos/agrovoc/c_7712 http://aims.fao.org/aos/agrovoc/c_24833 http://aims.fao.org/aos/agrovoc/c_3222 http://aims.fao.org/aos/agrovoc/c_11116 http://aims.fao.org/aos/agrovoc/c_15974 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_4891 Web accessible databases were developed at CIRAD in order to analyse and store molecular and phenotypic data of the numerous yet poorly documented tropical crops. TropGENE-DB (http://tropgenedb.cirad.fr) is a crop information system created to store information on genetic resources (agro-morphological data, parentages, allelic diversity), molecular markers, genetics maps, result of QTL (Quantitative Trait Loci) analyses, data from physical mapping, sequences, genes, as well as corresponding references. TropGENE-DB is organized on a crop-basis with currently four running modules (banana, cocoa, cotton and sugarcane), with plans to create additional modules for rice, oil palm, coconut, rubber tree, pineapple, taro, yam and sorghum. To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line database (http://genoplante-info.infobiogen.fr/OryzaTagLine/), a project supported by the French genomic initiative Génoplante. Generic features such as production records, seed stocks, information on GUS or GFP assays in specific organs or tissues, and morphophysiological alterations observed during field evaluation of the insertion lines are displayed. OryGenesDB (http://orygenesdb.cirad.fr) goal is to help rice molecular geneticists to search for insertion lines in their favourite genes and link this information with related molecular data from several resources (cDNA, Gene, EST...) across a friendly user interface. (Texte intégral) conference_item info:eu-repo/semantics/conferenceObject Conference info:eu-repo/semantics/closedAccess http://www.intl-pag.org/13/abstracts/PAG13_P810.html http://catalogue-bibliotheques.cirad.fr/cgi-bin/koha/opac-detail.pl?biblionumber=185359 info:eu-repo/semantics/altIdentifier/purl/http://www.intl-pag.org/13/abstracts/PAG13_P810.html |
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CIRAD FR |
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Europa del Oeste |
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Biblioteca del CIRAD Francia |
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F30 - Génétique et amélioration des plantes U10 - Informatique, mathématiques et statistiques Oryza Musa Gossypium Saccharum Theobroma banque de données génétique banque de gènes génie génétique marqueur génétique séquence nucléotidique adn biologie moléculaire http://aims.fao.org/aos/agrovoc/c_5435 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_6725 http://aims.fao.org/aos/agrovoc/c_7712 http://aims.fao.org/aos/agrovoc/c_24833 http://aims.fao.org/aos/agrovoc/c_3222 http://aims.fao.org/aos/agrovoc/c_11116 http://aims.fao.org/aos/agrovoc/c_15974 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_4891 F30 - Génétique et amélioration des plantes U10 - Informatique, mathématiques et statistiques Oryza Musa Gossypium Saccharum Theobroma banque de données génétique banque de gènes génie génétique marqueur génétique séquence nucléotidique adn biologie moléculaire http://aims.fao.org/aos/agrovoc/c_5435 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_6725 http://aims.fao.org/aos/agrovoc/c_7712 http://aims.fao.org/aos/agrovoc/c_24833 http://aims.fao.org/aos/agrovoc/c_3222 http://aims.fao.org/aos/agrovoc/c_11116 http://aims.fao.org/aos/agrovoc/c_15974 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_4891 |
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F30 - Génétique et amélioration des plantes U10 - Informatique, mathématiques et statistiques Oryza Musa Gossypium Saccharum Theobroma banque de données génétique banque de gènes génie génétique marqueur génétique séquence nucléotidique adn biologie moléculaire http://aims.fao.org/aos/agrovoc/c_5435 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_6725 http://aims.fao.org/aos/agrovoc/c_7712 http://aims.fao.org/aos/agrovoc/c_24833 http://aims.fao.org/aos/agrovoc/c_3222 http://aims.fao.org/aos/agrovoc/c_11116 http://aims.fao.org/aos/agrovoc/c_15974 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_4891 F30 - Génétique et amélioration des plantes U10 - Informatique, mathématiques et statistiques Oryza Musa Gossypium Saccharum Theobroma banque de données génétique banque de gènes génie génétique marqueur génétique séquence nucléotidique adn biologie moléculaire http://aims.fao.org/aos/agrovoc/c_5435 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_6725 http://aims.fao.org/aos/agrovoc/c_7712 http://aims.fao.org/aos/agrovoc/c_24833 http://aims.fao.org/aos/agrovoc/c_3222 http://aims.fao.org/aos/agrovoc/c_11116 http://aims.fao.org/aos/agrovoc/c_15974 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_4891 Ruiz, Manuel Droc, Gaëtan Larmande, Pierre Perin, Christophe Rouard, Mathieu Courtois, Brigitte Web accessible tropical crop databases |
description |
Web accessible databases were developed at CIRAD in order to analyse and store molecular and phenotypic data of the numerous yet poorly documented tropical crops. TropGENE-DB (http://tropgenedb.cirad.fr) is a crop information system created to store information on genetic resources (agro-morphological data, parentages, allelic diversity), molecular markers, genetics maps, result of QTL (Quantitative Trait Loci) analyses, data from physical mapping, sequences, genes, as well as corresponding references. TropGENE-DB is organized on a crop-basis with currently four running modules (banana, cocoa, cotton and sugarcane), with plans to create additional modules for rice, oil palm, coconut, rubber tree, pineapple, taro, yam and sorghum. To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare), we developed the Oryza Tag Line database (http://genoplante-info.infobiogen.fr/OryzaTagLine/), a project supported by the French genomic initiative Génoplante. Generic features such as production records, seed stocks, information on GUS or GFP assays in specific organs or tissues, and morphophysiological alterations observed during field evaluation of the insertion lines are displayed. OryGenesDB (http://orygenesdb.cirad.fr) goal is to help rice molecular geneticists to search for insertion lines in their favourite genes and link this information with related molecular data from several resources (cDNA, Gene, EST...) across a friendly user interface. (Texte intégral) |
format |
conference_item |
topic_facet |
F30 - Génétique et amélioration des plantes U10 - Informatique, mathématiques et statistiques Oryza Musa Gossypium Saccharum Theobroma banque de données génétique banque de gènes génie génétique marqueur génétique séquence nucléotidique adn biologie moléculaire http://aims.fao.org/aos/agrovoc/c_5435 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_6725 http://aims.fao.org/aos/agrovoc/c_7712 http://aims.fao.org/aos/agrovoc/c_24833 http://aims.fao.org/aos/agrovoc/c_3222 http://aims.fao.org/aos/agrovoc/c_11116 http://aims.fao.org/aos/agrovoc/c_15974 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_4891 |
author |
Ruiz, Manuel Droc, Gaëtan Larmande, Pierre Perin, Christophe Rouard, Mathieu Courtois, Brigitte |
author_facet |
Ruiz, Manuel Droc, Gaëtan Larmande, Pierre Perin, Christophe Rouard, Mathieu Courtois, Brigitte |
author_sort |
Ruiz, Manuel |
title |
Web accessible tropical crop databases |
title_short |
Web accessible tropical crop databases |
title_full |
Web accessible tropical crop databases |
title_fullStr |
Web accessible tropical crop databases |
title_full_unstemmed |
Web accessible tropical crop databases |
title_sort |
web accessible tropical crop databases |
publisher |
s.n. |
url |
http://agritrop.cirad.fr/525784/ |
work_keys_str_mv |
AT ruizmanuel webaccessibletropicalcropdatabases AT drocgaetan webaccessibletropicalcropdatabases AT larmandepierre webaccessibletropicalcropdatabases AT perinchristophe webaccessibletropicalcropdatabases AT rouardmathieu webaccessibletropicalcropdatabases AT courtoisbrigitte webaccessibletropicalcropdatabases |
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