Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers
A large Elaeis guineensis microsatellite development program has been undertaken to generate wide range of (GA)n, (GT)n and (CCG)n Simple Sequence Repeats (SSR) markers useful for oil palm genetic mapping, genetic diversity study and variety identification. Comparative results building several microsatellite-enriched libraries demonstrate that an optimised hybridization and capture methodology, using biotin-labelled microsatellite oligoprobes and streptavidin-coated magnetic beads, is the quickest and best adapted procedure to ensure a high enrichment rate with minimal redundancy. A set of 21 SSR loci are evaluated with estimates of the size range and expected heterozygosity in E. guineensis as in the close related E. oleifera as where an optimal transportability of the SSR markers was observed. SSR mendelianation allows oil palm breeders to use SSR markers for genetic mapping and for the of agronomic genes based on both intra- or inter-specific progenies. Multivariate data is show the ability of our developed SSR markers to reveal the genetic diversity structure E. guineensis and E. oleifera natural populations, in accordance with already measured ships and with geographical origins. Very high levels of allelic variability indicate that it will be a powerful tool for variety identification in the Elaeis species.
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Subjects: | F30 - Génétique et amélioration des plantes, Elaeis guineensis, Elaeis oleifera, marqueur génétique, microsatellite, adn, variation génétique, http://aims.fao.org/aos/agrovoc/c_2509, http://aims.fao.org/aos/agrovoc/c_1904, http://aims.fao.org/aos/agrovoc/c_24030, http://aims.fao.org/aos/agrovoc/c_36574, http://aims.fao.org/aos/agrovoc/c_2347, http://aims.fao.org/aos/agrovoc/c_15975, |
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dig-cirad-fr-4769172024-01-28T08:41:20Z http://agritrop.cirad.fr/476917/ http://agritrop.cirad.fr/476917/ Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers. Billotte Norbert, Risterucci Ange-Marie, Barcelos Edson, Noyer Jean-Louis, Amblard Philippe, Baurens Franc-Christophe. 2006. In : Proceedings of the International Symposium on oil palm genetics resources and their utilization, 8-10 June 2000, Kuala Lumpur, Malaysia. Rajanaidu Nookiah (ed.), Henson I.E. (ed.), Ariffin Darus (ed.). MPOB, IPGRI, ISOPB, BUROTROP. Kajang : MPOB, 480-496. ISBN 978-967-961-122-9 International Symposium on Oil Palm Genetic Resources and their Utilization, Kuala Lumpur, Malaisie, 8 Juin 2000/10 Juin 2000. Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers Billotte, Norbert Risterucci, Ange-Marie Barcelos, Edson Noyer, Jean-Louis Amblard, Philippe Baurens, Franc-Christophe eng 2006 MPOB Proceedings of the International Symposium on oil palm genetics resources and their utilization, 8-10 June 2000, Kuala Lumpur, Malaysia F30 - Génétique et amélioration des plantes Elaeis guineensis Elaeis oleifera marqueur génétique microsatellite adn variation génétique http://aims.fao.org/aos/agrovoc/c_2509 http://aims.fao.org/aos/agrovoc/c_1904 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_15975 A large Elaeis guineensis microsatellite development program has been undertaken to generate wide range of (GA)n, (GT)n and (CCG)n Simple Sequence Repeats (SSR) markers useful for oil palm genetic mapping, genetic diversity study and variety identification. Comparative results building several microsatellite-enriched libraries demonstrate that an optimised hybridization and capture methodology, using biotin-labelled microsatellite oligoprobes and streptavidin-coated magnetic beads, is the quickest and best adapted procedure to ensure a high enrichment rate with minimal redundancy. A set of 21 SSR loci are evaluated with estimates of the size range and expected heterozygosity in E. guineensis as in the close related E. oleifera as where an optimal transportability of the SSR markers was observed. SSR mendelianation allows oil palm breeders to use SSR markers for genetic mapping and for the of agronomic genes based on both intra- or inter-specific progenies. Multivariate data is show the ability of our developed SSR markers to reveal the genetic diversity structure E. guineensis and E. oleifera natural populations, in accordance with already measured ships and with geographical origins. Very high levels of allelic variability indicate that it will be a powerful tool for variety identification in the Elaeis species. conference_item info:eu-repo/semantics/conferenceObject Conference info:eu-repo/semantics/closedAccess http://catalogue-bibliotheques.cirad.fr/cgi-bin/koha/opac-detail.pl?biblionumber=162302 http://catalogue-bibliotheques.cirad.fr/cgi-bin/koha/opac-detail.pl?biblionumber=198605 |
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F30 - Génétique et amélioration des plantes Elaeis guineensis Elaeis oleifera marqueur génétique microsatellite adn variation génétique http://aims.fao.org/aos/agrovoc/c_2509 http://aims.fao.org/aos/agrovoc/c_1904 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_15975 F30 - Génétique et amélioration des plantes Elaeis guineensis Elaeis oleifera marqueur génétique microsatellite adn variation génétique http://aims.fao.org/aos/agrovoc/c_2509 http://aims.fao.org/aos/agrovoc/c_1904 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_15975 |
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F30 - Génétique et amélioration des plantes Elaeis guineensis Elaeis oleifera marqueur génétique microsatellite adn variation génétique http://aims.fao.org/aos/agrovoc/c_2509 http://aims.fao.org/aos/agrovoc/c_1904 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_15975 F30 - Génétique et amélioration des plantes Elaeis guineensis Elaeis oleifera marqueur génétique microsatellite adn variation génétique http://aims.fao.org/aos/agrovoc/c_2509 http://aims.fao.org/aos/agrovoc/c_1904 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_15975 Billotte, Norbert Risterucci, Ange-Marie Barcelos, Edson Noyer, Jean-Louis Amblard, Philippe Baurens, Franc-Christophe Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers |
description |
A large Elaeis guineensis microsatellite development program has been undertaken to generate wide range of (GA)n, (GT)n and (CCG)n Simple Sequence Repeats (SSR) markers useful for oil palm genetic mapping, genetic diversity study and variety identification. Comparative results building several microsatellite-enriched libraries demonstrate that an optimised hybridization and capture methodology, using biotin-labelled microsatellite oligoprobes and streptavidin-coated magnetic beads, is the quickest and best adapted procedure to ensure a high enrichment rate with minimal redundancy. A set of 21 SSR loci are evaluated with estimates of the size range and expected heterozygosity in E. guineensis as in the close related E. oleifera as where an optimal transportability of the SSR markers was observed. SSR mendelianation allows oil palm breeders to use SSR markers for genetic mapping and for the of agronomic genes based on both intra- or inter-specific progenies. Multivariate data is show the ability of our developed SSR markers to reveal the genetic diversity structure E. guineensis and E. oleifera natural populations, in accordance with already measured ships and with geographical origins. Very high levels of allelic variability indicate that it will be a powerful tool for variety identification in the Elaeis species. |
format |
conference_item |
topic_facet |
F30 - Génétique et amélioration des plantes Elaeis guineensis Elaeis oleifera marqueur génétique microsatellite adn variation génétique http://aims.fao.org/aos/agrovoc/c_2509 http://aims.fao.org/aos/agrovoc/c_1904 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_15975 |
author |
Billotte, Norbert Risterucci, Ange-Marie Barcelos, Edson Noyer, Jean-Louis Amblard, Philippe Baurens, Franc-Christophe |
author_facet |
Billotte, Norbert Risterucci, Ange-Marie Barcelos, Edson Noyer, Jean-Louis Amblard, Philippe Baurens, Franc-Christophe |
author_sort |
Billotte, Norbert |
title |
Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers |
title_short |
Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers |
title_full |
Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers |
title_fullStr |
Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers |
title_full_unstemmed |
Development and characterisation of oil palm (Elaeis guineensis Jacq.) microsatellite markers |
title_sort |
development and characterisation of oil palm (elaeis guineensis jacq.) microsatellite markers |
publisher |
MPOB |
url |
http://agritrop.cirad.fr/476917/ |
work_keys_str_mv |
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_version_ |
1792494773651636224 |