Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers

Previous studies have suggested that the Mesoamerican small-seeded landraces of Lima bean may have been domesticated more than once in Mesoamerica, once in central-western Mexico and another one in an area between Guatemala and Costa Rica. However, these findings were based on sequencing of only one locus from nuclear DNA, and additional confirmation was needed. Here we contribute with additional data on the origin of the Mesoamerican landraces and document the founder effect due to domestication. We characterized 62 domesticated, 87 wild and six weedy Lima bean accessions with ten microsatellite loci. Genetic relationships were analyzed using genetic distances and Bayesian clustering approaches. Domestication bottlenecks were documented using inter-population comparisons and M ratios. The results support at least one domestication event in the area of distribution of gene pool MI in central-western Mexico and also show that some landraces are genetically related to wild accessions of gene pool MII. Also, our data support founder effects due to domestication in Mesoamerican Lima bean landraces. Although we could not establish more specifically the place of origin of the Mesoamerican Lima bean landraces, our results show that these are not a genetically homogeneous group, a finding that may be compatible with a scenario of more than one domestication event accompanied by gene flow. The complex genetic makeup of landraces that we found indicates that a more comprehensive geographic and genomic sampling is needed in order to establish how domestication processes and gene flow have shaped the current genetic structure of landraces.

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Main Authors: RUBEN HUMBERTO ANDUEZA NOH, JAIME MARTINEZ CASTILLO, MARÍA ISABEL CHACÓN SÁNCHEZ
Format: info:eu-repo/semantics/article biblioteca
Language:eng
Subjects:info:eu-repo/classification/Autores/BAYESIAN CLUSTERING, info:eu-repo/classification/Autores/CROP DOMESTICATION, info:eu-repo/classification/Autores/FOUNDER EFFECT, info:eu-repo/classification/Autores/GENETIC DISTANCE, info:eu-repo/classification/Autores/SSR MARKERS, info:eu-repo/classification/Autores/WILD ANCESTORS, info:eu-repo/classification/cti/2,
Online Access:http://cicy.repositorioinstitucional.mx/jspui/handle/1003/1085
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spelling dig-cicy-1003-10852018-06-26T15:55:04Z Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers RUBEN HUMBERTO ANDUEZA NOH JAIME MARTINEZ CASTILLO MARÍA ISABEL CHACÓN SÁNCHEZ 2015 info:eu-repo/semantics/article Previous studies have suggested that the Mesoamerican small-seeded landraces of Lima bean may have been domesticated more than once in Mesoamerica, once in central-western Mexico and another one in an area between Guatemala and Costa Rica. However, these findings were based on sequencing of only one locus from nuclear DNA, and additional confirmation was needed. Here we contribute with additional data on the origin of the Mesoamerican landraces and document the founder effect due to domestication. We characterized 62 domesticated, 87 wild and six weedy Lima bean accessions with ten microsatellite loci. Genetic relationships were analyzed using genetic distances and Bayesian clustering approaches. Domestication bottlenecks were documented using inter-population comparisons and M ratios. The results support at least one domestication event in the area of distribution of gene pool MI in central-western Mexico and also show that some landraces are genetically related to wild accessions of gene pool MII. Also, our data support founder effects due to domestication in Mesoamerican Lima bean landraces. Although we could not establish more specifically the place of origin of the Mesoamerican Lima bean landraces, our results show that these are not a genetically homogeneous group, a finding that may be compatible with a scenario of more than one domestication event accompanied by gene flow. The complex genetic makeup of landraces that we found indicates that a more comprehensive geographic and genomic sampling is needed in order to establish how domestication processes and gene flow have shaped the current genetic structure of landraces. info:eu-repo/classification/Autores/BAYESIAN CLUSTERING info:eu-repo/classification/Autores/CROP DOMESTICATION info:eu-repo/classification/Autores/FOUNDER EFFECT info:eu-repo/classification/Autores/GENETIC DISTANCE info:eu-repo/classification/Autores/SSR MARKERS info:eu-repo/classification/Autores/WILD ANCESTORS info:eu-repo/classification/cti/2 info:eu-repo/classification/cti/2  Genetica, 143(6), 657-669, 2015 http://cicy.repositorioinstitucional.mx/jspui/handle/1003/1085 info:eu-repo/semantics/datasetDOI/DOI: 10.1007/s10709-015-9863-0 info:eu-repo/semantics/openAccess eng citation:Andueza-Noh, R. H., Martínez-Castillo, J., & Chacón-Sánchez, M. I. (2015). Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers. Genetica, 143(6), 657-669. http://creativecommons.org/licenses/by-nc-nd/4.0 info:eu-repo/semantics/publishedVersion application/pdf
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country México
countrycode MX
component Bibliográfico
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region America del Norte
libraryname Biblioteca del CICY
language eng
topic info:eu-repo/classification/Autores/BAYESIAN CLUSTERING
info:eu-repo/classification/Autores/CROP DOMESTICATION
info:eu-repo/classification/Autores/FOUNDER EFFECT
info:eu-repo/classification/Autores/GENETIC DISTANCE
info:eu-repo/classification/Autores/SSR MARKERS
info:eu-repo/classification/Autores/WILD ANCESTORS
info:eu-repo/classification/cti/2
info:eu-repo/classification/cti/2
info:eu-repo/classification/Autores/BAYESIAN CLUSTERING
info:eu-repo/classification/Autores/CROP DOMESTICATION
info:eu-repo/classification/Autores/FOUNDER EFFECT
info:eu-repo/classification/Autores/GENETIC DISTANCE
info:eu-repo/classification/Autores/SSR MARKERS
info:eu-repo/classification/Autores/WILD ANCESTORS
info:eu-repo/classification/cti/2
info:eu-repo/classification/cti/2
spellingShingle info:eu-repo/classification/Autores/BAYESIAN CLUSTERING
info:eu-repo/classification/Autores/CROP DOMESTICATION
info:eu-repo/classification/Autores/FOUNDER EFFECT
info:eu-repo/classification/Autores/GENETIC DISTANCE
info:eu-repo/classification/Autores/SSR MARKERS
info:eu-repo/classification/Autores/WILD ANCESTORS
info:eu-repo/classification/cti/2
info:eu-repo/classification/cti/2
info:eu-repo/classification/Autores/BAYESIAN CLUSTERING
info:eu-repo/classification/Autores/CROP DOMESTICATION
info:eu-repo/classification/Autores/FOUNDER EFFECT
info:eu-repo/classification/Autores/GENETIC DISTANCE
info:eu-repo/classification/Autores/SSR MARKERS
info:eu-repo/classification/Autores/WILD ANCESTORS
info:eu-repo/classification/cti/2
info:eu-repo/classification/cti/2
RUBEN HUMBERTO ANDUEZA NOH
JAIME MARTINEZ CASTILLO
MARÍA ISABEL CHACÓN SÁNCHEZ
Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers
description Previous studies have suggested that the Mesoamerican small-seeded landraces of Lima bean may have been domesticated more than once in Mesoamerica, once in central-western Mexico and another one in an area between Guatemala and Costa Rica. However, these findings were based on sequencing of only one locus from nuclear DNA, and additional confirmation was needed. Here we contribute with additional data on the origin of the Mesoamerican landraces and document the founder effect due to domestication. We characterized 62 domesticated, 87 wild and six weedy Lima bean accessions with ten microsatellite loci. Genetic relationships were analyzed using genetic distances and Bayesian clustering approaches. Domestication bottlenecks were documented using inter-population comparisons and M ratios. The results support at least one domestication event in the area of distribution of gene pool MI in central-western Mexico and also show that some landraces are genetically related to wild accessions of gene pool MII. Also, our data support founder effects due to domestication in Mesoamerican Lima bean landraces. Although we could not establish more specifically the place of origin of the Mesoamerican Lima bean landraces, our results show that these are not a genetically homogeneous group, a finding that may be compatible with a scenario of more than one domestication event accompanied by gene flow. The complex genetic makeup of landraces that we found indicates that a more comprehensive geographic and genomic sampling is needed in order to establish how domestication processes and gene flow have shaped the current genetic structure of landraces.
format info:eu-repo/semantics/article
topic_facet info:eu-repo/classification/Autores/BAYESIAN CLUSTERING
info:eu-repo/classification/Autores/CROP DOMESTICATION
info:eu-repo/classification/Autores/FOUNDER EFFECT
info:eu-repo/classification/Autores/GENETIC DISTANCE
info:eu-repo/classification/Autores/SSR MARKERS
info:eu-repo/classification/Autores/WILD ANCESTORS
info:eu-repo/classification/cti/2
info:eu-repo/classification/cti/2
author RUBEN HUMBERTO ANDUEZA NOH
JAIME MARTINEZ CASTILLO
MARÍA ISABEL CHACÓN SÁNCHEZ
author_facet RUBEN HUMBERTO ANDUEZA NOH
JAIME MARTINEZ CASTILLO
MARÍA ISABEL CHACÓN SÁNCHEZ
author_sort RUBEN HUMBERTO ANDUEZA NOH
title Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers
title_short Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers
title_full Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers
title_fullStr Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers
title_full_unstemmed Domestication of small-seeded lima bean (Phaseolus lunatus L.) landraces in Mesoamerica: evidence from microsatellite markers
title_sort domestication of small-seeded lima bean (phaseolus lunatus l.) landraces in mesoamerica: evidence from microsatellite markers
url http://cicy.repositorioinstitucional.mx/jspui/handle/1003/1085
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AT mariaisabelchaconsanchez domesticationofsmallseededlimabeanphaseoluslunatusllandracesinmesoamericaevidencefrommicrosatellitemarkers
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