Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus

Genotype II African swine fever virus (ASFV) has been plaguing Asian pig industry since 2018. Recently, genotype I ASFV was reported for the first time in China. Since there is no commercial vaccine available against ASFV, early onsite detection and quick culling procedures are commonly used by many countries all over the world. It is important that the above two genotypes of ASFV could be quickly differentiated during onsite detection at the same time. In this study, we established a sensitive and simple Fluorescent Probe Hydrolysis-Insulated isothermal PCR (iiPCR) that can detect and differentiate two genotypes of ASFV within 40 minutes. The positive or negative results of tested samples were displayed on the screen of the device automatically after PCR amplification was complete. The detection limit of the iiPCR was tested to be 20 copies for both genotype I and genotype II ASFVs. There was no cross-reactivity with other swine viruses by using the established iiPCR. Fifty-eight ASFV positive samples confirmed by National ASF Reference Laboratory were subjected to the established duplex iiPCR for genotype differentiation. The results showed that all these ASFV-positive samples belong to genotype II. At last, we found serum samples could be directly used as the templates for iiPCR without comprising sensitivity and specificity. Therefore, the duplex iiPCR established in study provide a useful tool for ASFV onsite detection and genotype differentiation.

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Main Authors: Song, R., Liu, P., Yang, Y., Hu Suk Lee, Chen, C., Wu, X., Li, X.
Format: Journal Article biblioteca
Language:English
Published: Frontiers Media 2022-07-07
Subjects:african swine fever virus, diagnostic techniques, genetic techniques, pcr, swine, animal diseases,
Online Access:https://hdl.handle.net/10568/120063
https://doi.org/10.3389/fcimb.2022.948771
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spelling dig-cgspace-10568-1200632023-12-08T19:36:04Z Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus Song, R. Liu, P. Yang, Y. Hu Suk Lee Chen, C. Wu, X. Li, X. african swine fever virus diagnostic techniques genetic techniques pcr swine animal diseases Genotype II African swine fever virus (ASFV) has been plaguing Asian pig industry since 2018. Recently, genotype I ASFV was reported for the first time in China. Since there is no commercial vaccine available against ASFV, early onsite detection and quick culling procedures are commonly used by many countries all over the world. It is important that the above two genotypes of ASFV could be quickly differentiated during onsite detection at the same time. In this study, we established a sensitive and simple Fluorescent Probe Hydrolysis-Insulated isothermal PCR (iiPCR) that can detect and differentiate two genotypes of ASFV within 40 minutes. The positive or negative results of tested samples were displayed on the screen of the device automatically after PCR amplification was complete. The detection limit of the iiPCR was tested to be 20 copies for both genotype I and genotype II ASFVs. There was no cross-reactivity with other swine viruses by using the established iiPCR. Fifty-eight ASFV positive samples confirmed by National ASF Reference Laboratory were subjected to the established duplex iiPCR for genotype differentiation. The results showed that all these ASFV-positive samples belong to genotype II. At last, we found serum samples could be directly used as the templates for iiPCR without comprising sensitivity and specificity. Therefore, the duplex iiPCR established in study provide a useful tool for ASFV onsite detection and genotype differentiation. 2022-07-07 2022-07-07T09:59:46Z 2022-07-07T09:59:46Z Journal Article Song, R., Liu, P., Yang, Y., Hu Suk Lee, Chen, C., Wu, X. and Li, X. 2022. Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus. Frontiers in Cellular and Infection Microbiology 12: 948771. 2235-2988 https://hdl.handle.net/10568/120063 https://doi.org/10.3389/fcimb.2022.948771 en CC-BY-4.0 Open Access 948771 Frontiers Media Frontiers in Cellular and Infection Microbiology
institution CGIAR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cgspace
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CGIAR
language English
topic african swine fever virus
diagnostic techniques
genetic techniques
pcr
swine
animal diseases
african swine fever virus
diagnostic techniques
genetic techniques
pcr
swine
animal diseases
spellingShingle african swine fever virus
diagnostic techniques
genetic techniques
pcr
swine
animal diseases
african swine fever virus
diagnostic techniques
genetic techniques
pcr
swine
animal diseases
Song, R.
Liu, P.
Yang, Y.
Hu Suk Lee
Chen, C.
Wu, X.
Li, X.
Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus
description Genotype II African swine fever virus (ASFV) has been plaguing Asian pig industry since 2018. Recently, genotype I ASFV was reported for the first time in China. Since there is no commercial vaccine available against ASFV, early onsite detection and quick culling procedures are commonly used by many countries all over the world. It is important that the above two genotypes of ASFV could be quickly differentiated during onsite detection at the same time. In this study, we established a sensitive and simple Fluorescent Probe Hydrolysis-Insulated isothermal PCR (iiPCR) that can detect and differentiate two genotypes of ASFV within 40 minutes. The positive or negative results of tested samples were displayed on the screen of the device automatically after PCR amplification was complete. The detection limit of the iiPCR was tested to be 20 copies for both genotype I and genotype II ASFVs. There was no cross-reactivity with other swine viruses by using the established iiPCR. Fifty-eight ASFV positive samples confirmed by National ASF Reference Laboratory were subjected to the established duplex iiPCR for genotype differentiation. The results showed that all these ASFV-positive samples belong to genotype II. At last, we found serum samples could be directly used as the templates for iiPCR without comprising sensitivity and specificity. Therefore, the duplex iiPCR established in study provide a useful tool for ASFV onsite detection and genotype differentiation.
format Journal Article
topic_facet african swine fever virus
diagnostic techniques
genetic techniques
pcr
swine
animal diseases
author Song, R.
Liu, P.
Yang, Y.
Hu Suk Lee
Chen, C.
Wu, X.
Li, X.
author_facet Song, R.
Liu, P.
Yang, Y.
Hu Suk Lee
Chen, C.
Wu, X.
Li, X.
author_sort Song, R.
title Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus
title_short Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus
title_full Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus
title_fullStr Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus
title_full_unstemmed Development of a duplex insulated isothermal PCR assay for rapid on-site detection and differentiation of genotypes 1 and 2 of African swine fever virus
title_sort development of a duplex insulated isothermal pcr assay for rapid on-site detection and differentiation of genotypes 1 and 2 of african swine fever virus
publisher Frontiers Media
publishDate 2022-07-07
url https://hdl.handle.net/10568/120063
https://doi.org/10.3389/fcimb.2022.948771
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