From DNA to diagnostics: A case study using macroinvertebrate metabarcoding to assess the effectiveness of restoration measures in a Dutch stream

by van der Lee, Gea H., Polling, Marcel, van der Laan, Iris, Kodde, Linda, Verdonschot, Ralf

WGS sequencing and Genome Assembly of the Chrysanthemum makinoi genome

by van Lieshout, Natascha, van Kaauwen, Martijn, Kodde, Linda, Arens, Paul, Smulders, Rene, Visser, Richard, Finkers, Richard

The genome of Lupinus mutabilis : Evolution and genetics of an emerging bio-based crop

by Pancaldi, Francesco, Gulisano, Agata, Severing, Edouard I., van Kaauwen, Martijn, Finkers, Richard, Kodde, Linda, Trindade, Luisa M.

De novo whole-genome assembly of Chrysanthemum makinoi, a key wild chrysanthemum

by van Lieshout, Natascha, van Kaauwen, Martijn, Kodde, Linda, Arens, Paul, Smulders, Marinus J.M., Visser, Richard G.F., Finkers, Richard

Advanced genebank management of genetic resources of European wild apple, Malus sylvestris, using genome-wide SNP array data

by Buiteveld, Joukje, Koehorst-van Putten, Herma J.J., Kodde, Linda, Laros, Ivo, Tumino, Giorgio, Howard, Nicholas P., van de Weg, Eric, Smulders, Marinus J.M.

Tetraose steroidal glycoalkaloids from potato provide resistance against Alternaria solani and Colorado potato beetle

by Wolters, Pieter J., Wouters, Doret, Tikunov, Yury M., Ayilalath, Shimlal, Kodde, Linda P., Strijker, Miriam F., Caarls, Lotte, Visser, Richard G.F., Vleeshouwers, Vivianne G.A.A.

Solanum commersonii genome sequencing and assembly

by Wolters, Pieter J., Wouters, Doret, Tikunov, Yury M., Ayilalath, Shimlal, Kodde, Linda P., Strijker, Miriam F., Caarls, Lotte, Visser, Richard G.F., Vleeshouwers, Vivianne G.A.A.

Bulked segregant analysis RNA-seq (BSR-Seq) of S. commersonii population segregating for resistance to Alternaria solani

by Wolters, Pieter J., Wouters, Doret, Tikunov, Yury M., Ayilalath, Shimlal, Kodde, Linda P., Strijker, Miriam F., Caarls, Lotte, Visser, Richard G.F., Vleeshouwers, Vivianne G.A.A.

Allelic variants of the NLR protein Rpi-chc1 differentially recognize members of the Phytophthora infestans PexRD12/31 effector superfamily through the leucine-rich repeat domain

by Monino-Lopez, Daniel, Nijenhuis, Maarten, Kodde, Linda, Kamoun, Sophien, Salehian, Hamed, Schentsnyi, Kyrylo, Stam, Remco, Lokossou, Anoma, Abd-El-Haliem, Ahmed, Visser, Richard G.F., Vossen, Jack H.

Solanum tuberosum cultivar: Solyntus (potato) Solanum tuberosum Solyntus Genome sequencing and assembly

by van Lieshout, Natascha, van der Burgt, Ate, de Vries, Michiel, ter Maat, Menno, Eickholt, David, Esselink, Danny, van Kaauwen, Martijn, Kodde, Linda, Visser, Richard, Lindhout, Pim, Finkers, Richard

WGS sequencing and Genome Assembly of the 16Gb Onion genome

by Finkers, Richard, van Kaauwen, Martijn, Ament, Kai, Burger-Meijer, Karin, Egging, Raymond, Huits, Henk, Kodde, Linda, Kroon, Laurens, Shigyo, Masayoshi, Sato, Shusei, Vosman, Ben, van Workum, Wilbert, Scholten, Olga

Insights from the first genome assembly of Onion (Allium cepa)

by Finkers, Richard, van Kaauwen, Martijn, Ament, Kai, Burger-Meijer, Karin, Egging, Raymond, Huits, Henk, Kodde, Linda, Kroon, Laurens, Shigyo, Masayoshi, Sato, Shusei, Vosman, Ben, van Workum, Wilbert, Scholten, Olga

Supplemental Material for van Lieshout et al., 2020

by van Lieshout, Natascha, van der Burgt, Ate, de Vries, Michiel E., ter Maat, Menno, Eickholt, David, Esselink, Danny, van Kaauwen, Martijn, Kodde, Linda, Visser, Richard, Lindhout, Pim, Finkers, Richard

Solyntus, the new highly contiguous reference genome for potato (Solanum tuberosum)

by van Lieshout, Natascha, van der Burgt, Ate, de Vries, Michiel E., ter Maat, Menno, Eickholt, David, Esselink, Danny, van Kaauwen, Martijn P.W., Kodde, Linda P., Visser, Richard G.F., Lindhout, Pim, Finkers, Richard

Solanum tuberosum Solyntus Genome sequencing and assembly

by van Lieshout, Natascha, van der Burgt, Ate, de Vries, Michiel E., ter Maat, Menno, Eickholt, David, Esselink, Danny, van Kaauwen, Martijn P.W., Kodde, Linda P., Visser, Richard G.F., Lindhout, Pim, Finkers, Richard

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity

by Hoopes, Genevieve, Meng, Xiaoxi, Hamilton, John P., Achakkagari, Sai Reddy, de Alves Freitas Guesdes, Fernanda, Bolger, Marie E., Coombs, Joseph J., Esselink, Danny, Kaiser, Natalie R., Kodde, Linda, Kyriakidou, Maria, Lavrijssen, Brian, van Lieshout, Natascha, Shereda, Rachel, Tuttle, Heather K., Vaillancourt, Brieanne, Wood, Joshua C., de Boer, Jan M., Bornowski, Nolan, Bourke, Peter, Douches, David, van Eck, Herman J., Ellis, Dave, Feldman, Max J., Gardner, Kyle M., Hopman, Johannes C.P., Jiang, Jiming, De Jong, Walter S., Kuhl, Joseph C., Novy, Richard G., Oome, Stan, Sathuvalli, Vidyasagar, Tan, Ek Han, Ursum, Remco A., Vales, M.I., Vining, Kelly, Visser, Richard G.F., Vossen, Jack, Yencho, G.C., Anglin, Noelle L., Bachem, Christian W.B., Endelman, Jeffrey B., Shannon, Laura M., Strömvik, Martina V., Tai, Helen H., Usadel, Björn, Buell, Robin, Finkers, Richard

Phased, chromosome-scale genome assemblies of tetraploid potato reveals a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity

by Hoopes, Genevieve, Meng, Xiaoxi, Hamilton, John P., Achakkagari, Sai Reddy, de Alves Freitas Guedes, Fernanda, Bolger, Marie E., Coombs, Joseph J., Esselink, Danny, Kaiser, Natalie R., Kodde, Linda, Kyriakidou, Maria, Lavrijssen, Brian, van Lieshout, Natascha, Shereda, Rachel, Tuttle, Heather K., Vaillancourt, Brieanne, Wood, Joshua C., de Boer, Jan M., Bornowski, Nolan, Bourke, Peter, Douches, David, Van Eck, Herman J., Ellis, Dave, Feldman, Max J., Gardner, Kyle M., Hopman, Johannes C.P., Jiang, Jiming, De Jong, Walter S., Kuhl, Joseph C., Novy, Richard G., Oome, Stan, Sathuvalli, Vidyasagar, Tan, Ek Han, Ursum, Remco A., Vales, Isabel, Vining, Kelly, Visser, Richard G.F., Vossen, Jack, Yencho, Craig, Anglin, Noelle L., Bachem, Christian W.B., Endelman, Jeffrey B., Shannon, Laura M., Strömvik, Martina V., Tai, Helen H., Usadel, Björn, Buell, Robin, Finkers, Richard